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After Celebrating New Years, it's back to the beach. Quon wanders off, and Ayato follows her. They come up to ruins located in the forest. Apparently Quon and Ayato go missing, and and Haruka starts a search to find them. Quon and Ayato are off somewhere, and Haruka's search was stopped due to the fact they were no where to be found. Haruka ends up back at the ruins, where Quon and Ayato reappear in front of her again. B-story line: While Ayato and Quon are missing, Itsuki tries to pilot the RahXephon, but fails to do so.
Episodes
1Invasion of the Capital 2God and Man Awaken 3City of Two 4His own Watch 5Nirai-Kanai 6Obliterated Cities 7Day of Assembly 8Bitterly Cold Holy Night 9Small Shrine of Time 10Sonata of Recollection 11Kyoja Circuit 12The Black Egg 13Human Specimen #1 14The Boy in the Mirror 15The Children's Night 16Island of Others 17Return to the Labyrinth 18The Bond of Blue Blood 19Blue Friend 20The Artisan's Battle 21The Carved Seal of Xephon 22Operation Jupiter Obliteration 23From Here to Eternity 24Doorway to the Tuning 25God's Uncertain Music 26Far Beyond Eternity